ProDom 2005.1 Statistics
Release date November 2005

Sequence and Family Data

Proteins used to build ProDom 2005.1:
non fragmentary sequences from
SwissProt (Rel 44.5) + TREMBL (Rel 27.5) - Sep 13, 2004
1067651 (+47 % since 2004.1)
The clustering process was initiated with domains from the SCOP database. rel. 1.65
domain families with at least 2 sequences 275561 (+48 % since 2004.1)
domain families 736449
(+46% since 2004.1)
Families with a PDB link 11892
Families with a Prosite link (Patterns, Profiles) 40241
Families with a Pfam-A link 204504
Families with an InterPro link 237110


Global statistics

Distribution of the number of domains per sequence

NOTE - The sequences with more than 50 domains are not shown.


Distribution of the radius of gyration

NOTES -

  1. The families with radius of gyration higher than 200 PAM are not shown
  2. Only families with at least 2 sequences are used here


distribution of the diameter

NOTES -

  1. The families with diameter higher than 500 PAM are not shown
  2. Only families with at least 2 sequences are used here