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The ProDom references

[BRU] Catherine Bru, Emmanuel Courcelle, Sébastien Carrère, Yoann Beausse, Sandrine Dalmar, and Daniel Kahn (2005) The ProDom database of protein domain families: more emphasis on 3D. Nucleic Acids Res. 33: D212-D215
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[SERV2] Servant F, Bru C, Carr�re S, Courcelle E, Gouzy J, Peyruc D, Kahn D (2002) ProDom: Automated clustering of homologous domains. Briefings in Bioinformatics. vol 3, no 3:246-251

[FALQ] Falquet L, Pagni M, Bucher P, Hulo N, Sigrist CJ, Hofmann K, Bairoch A. (2002). The PROSITE database, its status in 2002 Nucleic Acids Res. 30:235-238
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[THOM] Julie D. Thompson, Frédéric Plewniak, Raymond Ripp, Jean-Claude Thierry and Olivier Poch (2001). Towards a Reliable Objective Function for Multiple Sequence Alignments. J.Mol.Biol. (2001) 314, 937-951.
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[SERV1] Corpet F, Servant F, Gouzy J, Kahn D (2000) ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons. Nucleic Acids Res. 28:267-269
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[BAIR]Bairoch A. and Apweiler R. (2000). The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res. 28:45-48
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[BATE]Bateman A, Birney E, Cerruti L, Durbin R, Etwiller L, Eddy SR, Griffiths-Jones S, Howe KL, Marshall M, Sonnhammer EL. (2002). The Pfam Protein Families Database. Nucleic Acids Research 30:276-280
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[APWE]Apweiler R et al (the Interpro Consortium) (2000) InterPro--an integrated documentation resource for protein families, domains and functional sites. Bioinformatics 2000 12:1145-1150
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[CORP2]Corpet F., Gouzy J., Kahn D. (1999) Bowsing protein families via the 'Rich Family Description' format, Bioinformatics. 15: 1020-1027
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[GOUZ2]Gouzy J., Corpet F. & Kahn D. (1999). Whole genome protein domain analysis using a new method for domain clustering, Computers and Chemistry. 23:333-340

[GUEX]Guex, N. and Peitsch, M. C. (1997) SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modelling. Electrophoresis 18:2714-2723

[GOUZ1]Gouzy J., Corpet F. and Kahn D. (1996). Graphical interface for ProDom domain families, TIBS, 21:493

[ETZO]Etzold T., Ulyanov A., and Argos P., SRS: Information Retrieval System for Molecular Biology Data Banks. Methods in Enzymology v. 266, p. 114, 1996

[ALTS2]Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402

(GLEM]Gl�met E. and Codani J.J. (1997). LASSAP, a LArge Scale Sequence compArison Package, Comp. Appl. BioSci

[GISH]Gish, Warren (1994-1997). unpublished

[BOUT]Boutell T., Graphic Library : gd 1.1 copyright 1994, 1995, Quest Protein Database Center, Cold Spring Harbor Labs

[CLAV2]Claverie J.M. & States D.J. (1993). Information Enhancement Methods for Large Scale Sequence Analysis,Computers and Chemistry 17:191-201

[CLAV1]Claverie J.M. (1993). Large Scale Sequence Analysis, Chapter 36 in "Automated DNA sequencing and analysis techniques" (J.C. Venter, ed), Academic Press

[ALTS1]Altschul SF, Gish W, Miller W, Myers EW, & Lipman DJ, 1990,Basic local alignment search tool, J. Mol. Biol. 215:403-410

[CORP1]Corpet F. (1988). Multiple sequence alignment with hierarchical clustering, Nucl. Acids Res. 16:10881-10890

[PEIT2]Peitsch, M. C. (1996). ProMod and Swiss-Model: Internet-based tools for automated comparative protein modelling. Biochem Soc Trans 24:274-279.

[ROST]Rost B. (1996). PHD predicting one-dimensional protein structure by profile based neural networks. Meth. in Enzym. 266:525-539

[WOOT2]Wootton, J. C. and S. Federhen (1996). Analysis of compositionally biased regions in sequence databases. Methods in Enzymology 266:554-571

[PEIT1]Peitsch, M.C. (1995). Protein Modelling by E-mail. Bio/Technology 13:658-660

[SONN]Sonnhammer, E.L.L. and Kahn, D. (1994). Modular arrangement of proteins as inferred from analysis of homology, Protein Sci. 3:482-492

[WOOT1]Wootton, J.C. and S. Federhen (1993). Statistics of local complexity in amino acid sequences and sequence databases. Computers in Chemistry 17:149-163

© The ProDom database is copyrighted by INRA and CNRS
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ProDom - Server maintained by Aurelie Laugraud , on behalf of the ProDom team
Graphics design Sandrine Dalmar
Last updated on November 6th, 2008.