ProDom 2006.1 Statistics
Release date November 2006

Sequence and Family Data

Proteins used to build ProDom 2006.1:
non fragmentary sequences from
SwissProt (Rel 48.7) + TREMBL (Rel 31.7) - Dec 20, 2005
2001128 (+87 % since 2005.1)
The clustering process was initiated with domains from the SCOP database. rel. 1.69
domain families with at least 2 sequences 574656 (+109 % since 2005.1)
domain families 1716114
(+133% since 2005.1)
Families with a PDB link 35284
Families with a Prosite link (Patterns, Profiles) 2008
Families with a Pfam-A link 10291
Families with an InterPro link 10346


Global statistics

Distribution of the number of domains per sequence

NOTE - The sequences with more than 50 domains are not shown.


Distribution of the radius of gyration

NOTES -

  1. The families with radius of gyration higher than 200 PAM are not shown
  2. Only families with at least 2 sequences are used here


distribution of the diameter

NOTES -

  1. The families with diameter higher than 500 PAM are not shown
  2. Only families with at least 2 sequences are used here