Release date = November 2008
A subset of the proteins used to build ProDom 2006.1 |
946570 (44.8 % of ProDom) |
|---|---|
| 267 | |
| 301126 (+69% since CG171) |
|
| 946570 (+89% since CG171) |
|
| 10349 | |
| 30143 | |
| 152952 | |
| 175884 |
ProDom-CG (Complete Genome) is a version of the ProDom database which holds only data originating from the complete genome sequencing projects. This release was builded using the following process:
Because ProDom-CG is built from a release of ProDom, we can use an AC numbering scheme consistent with the corresponding ProDom release:
CGinstead of PD This enabled us to provide users of the Graphics User Interface with two more buttons:
There are 23 archeal, 226 bacterial and 18 eukaryotic genomes in Prodom-CG.
| Type | Organism | TaxId | Short name | nb of seq | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CG17 | CG20 | CG42 | CG47 | CG67 | CG85 | CG120 | CG171 | CG267 | |||||
| A | Aeropyrium pernix K1 | 56636 | AERPE | 2695 | 2700 | 2702 | 2702 | 2703 | 2703 | 2703 | |||
| A | Archaeoglobus fulgidus | 2234 | ARCFU | 2407 | 2407 | 2396 | 2400 | 2400 | 2400 | 2400 | 2400 | 2398 | |
| A | Haloarcula marismortui | 2238 | HALMA | 4234 | |||||||||
| A | Halobacterium salinarium | 2242 | HALSA | 2425 | |||||||||
| A | Methanosarcina acetivorans | 2214 | METAC | 4469 | 4469 | 4470 | 4467 | ||||||
| A | Methanosarcina barkeri | 2208 | METBA | 3612 | |||||||||
| A | Methanococcus jannaschii | 2190 | METJA | 1770 | 1770 | 1773 | 1771 | 1773 | 1775 | 1777 | 1782 | 1782 | |
| A | Methanopyrus kandleri | 2320 | METKA | 1687 | 1687 | 1686 | 1685 | ||||||
| A | Methanosarcina mazei | 2209 | METMA | 3304 | 3304 | 3304 | 3303 | ||||||
| A | Methanococcus maripaludis | 39152 | METMP | 1721 | 1721 | ||||||||
| A | Methanobacterium thermoautotrophicum | 187420 | METTH | 1869 | 1869 | 1869 | 1869 | 464 | 1868 | 1868 | 1866 | 1866 | |
| A | Nanoarchaeum equitans | 160232 | NANEQ | 536 | 536 | ||||||||
| A | Picrophilus torridus | 82076 | PICTO | 1534 | 1535 | ||||||||
| A | Pyrococcus abyssi | 29292 | PYRAB | 1765 | 1762 | 1762 | 1758 | 1784 | 1786 | 1785 | |||
| A | Pyrobaculum aerophilum. | 13773 | PYRAE | 2595 | 2599 | 2599 | 2600 | 2590 | |||||
| A | Pyrococcus furiosus | 2261 | PYRFU | 2052 | 2052 | 2053 | 2043 | ||||||
| A | Pyrococcus horikoshii | 53953 | PYRHO | 2061 | 2061 | 2062 | 2066 | 2069 | 2070 | 2072 | 2076 | 2077 | |
| A | Pyrococcus kodakaraensis | 69014 | PYRKO | 2301 | |||||||||
| A | Sulfolobus acidocaldarius | 2285 | SULAC | 2221 | |||||||||
| A | Sulfolobus solfataricus | 2287 | SULSO | 2938 | 2938 | 2939 | 2939 | 2941 | 2938 | ||||
| A | Sulfolobus tokodaii | 111955 | SULTO | 2818 | 2818 | 2818 | 2819 | 2816 | |||||
| A | Thermoplasma acidophilum | 2303 | THEAC | 1478 | 1479 | 1479 | 1479 | 1479 | 1482 | 1482 | |||
| A | Thermoplasma volcanium | 50339 | THEVO | 1523 | 1523 | 1523 | 1524 | 1523 | |||||
| B | Acinetobacter sp. (strain ADP1). |
62977 | ACIAD | 3302 | 3310 | ||||||||
| B | Agrobacterium tumefaciens (strain C58 / ATCC 33970) | 176299 | AGRT5 | 5391 | 5391 | 5392 | 5397 | 5399 | |||||
| B | Anaplasma marginale (strain St. Maries) | 234826 | ANAMM | 945 | |||||||||
| B | Aquifex aeolicus | 103690 | ANASP | 6069 | 6072 | 6072 | 6072 | 6070 | |||||
| B | Aquifex aeolicus | 63363 | AQUAE | 1522 | 1522 | 1550 | 1549 | 1550 | 1551 | 1552 | 1552 | 1552 | |
| B | Azoarcus sp. (strain EbN1) | 76114 | AZOSE | 4462 | |||||||||
| B | Bacillus anthracis | 1392 | BACAN | 5611 | 5619 | ||||||||
| B | Bacillus cereus (strain ATCC 10987) |
222523 | BACC1 | 5818 | 5821 | ||||||||
| B | Bacillus cereus (strain ATCC 14579 / DSM 31) | 226900 | BACCR | 5240 | 5241 | 5240 | |||||||
| B | Bacillus cereus (strain ZK / E33L) | 288681 | BACCZ | 5134 | |||||||||
| B | Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) | 272559 | BACFN | 4225 | |||||||||
| B | Bacteroides fragilis | 817 | BACFR | 4596 | |||||||||
| B | Bacillus halodurans | 86665 | BACHD | 4066 | 3988 | 3987 | 4008 | 4007 | 4007 | 4007 | |||
| B | Bacillus thuringiensis (subsp. konkukian) | 180856 | BACHK | 5083 | 5089 | ||||||||
| B | Bacillus licheniformis (strain DSM 13 / ATCC 14580) | 279010 | BACLD | 4179 | |||||||||
| B | Bacillus clausii (strain KSM-K16) | 66692 | BACSK | 4103 | |||||||||
| B | Bacillus subtilis | 1423 | BACSU | 4100 | 4100 | 4133 | 4119 | 4093 | 4099 | 4092 | 4105 | 4104 | |
| B | Bacteroides thetaiotaomicron | 818 | BACTN | 4775 | 4775 | 4773 | |||||||
| B | Bartonella henselae (Rochalimaea henselae) | 38323 | BARHE | 1465 | 1466 | ||||||||
| B | Bartonella quintana (Rochalimaea quintana) | 803 | BARQU | 1137 | 1139 | ||||||||
| B | Bdellovibrio bacteriovorus | 959 | BDEBA | 3577 | 3583 | ||||||||
| B | Bifidobacterium longum | 216816 | BIFLO | 1724 | 1724 | 1724 | |||||||
| B | Blochmannia floridanus | 203907 | BLOFL (ex CANBF) | 583 | 583 | ||||||||
| B | Blochmannia pennsylvanicus (strain BPEN) | 291272 | BLOPB | 610 | |||||||||
| B | Bordetella bronchiseptica (Alcaligenes bronchisepticus) | 518 | BORBR | 4961 | 4961 | ||||||||
| B | Borrelia burgdorferi | 139 | BORBU | 1255 | 1255 | 1251 | 1247 | 1247 | 1251 | 1558 | 1558 | 1556 | |
| B | Borrelia garinii | 29519 | BORGA | 928 | |||||||||
| B | Bordetella parapertussis | 519 | BORPA | 4161 | 4154 | ||||||||
| B | Bordetella pertussis | 520 | BORPE | 3261 | 3251 | ||||||||
| B | Bradyrhizobium japonicum | 375 | BRAJA | 8257 | 8257 | 8252 | |||||||
| B | Brucella abortus | 235 | BRUAB | 3065 | |||||||||
| B | Brucella melitensis | 29459 | BRUME | 3188 | 3187 | 3186 | 3182 | 3181 | |||||
| B | Brucella suis | 29461 | BRUSU | 3247 | 3253 | 3256 | |||||||
| B | Buchnera aphidicola | 118099 | BUCAI | 568 | 573 | 573 | 572 | 572 | 572 | 572 | |||
| B | Buchnera aphidicola | 98794 | BUCAP | 560 | 560 | 561 | 562 | ||||||
| B | Buchnera aphidicola (subsp. Baizongia pistaciae) | 135842 | BUCBP | 507 | 507 | 507 | |||||||
| B | Burkholderia mallei (Pseudomonas mallei) | 13373 | BURMA | 4796 | |||||||||
| B | Burkholderia pseudomallei (Pseudomonas pseudomallei) | 28450 | BURPS | 5713 | |||||||||
| B | Campylobacter jejuni | 197 | CAMJE | 1613 | 1607 | 1607 | 1613 | 1613 | 1633 | 1627 | |||
| B | Campylobacter jejuni (strain RM1221) | 195099 | CAMJR | 1836 | |||||||||
| B | Carboxydothermus hydrogenoformans Z-2901 | 246194 | CARHY | 2615 | |||||||||
| B | Caulobacter crescentus | 69394 | CAUCR | 3717 | 3717 | 3718 | 3718 | 3718 | 3718 | ||||
| B | Chlamydophila abortus | 83555 | CHLAB | 931 | |||||||||
| B | Chlamydophila caviae | 83557 | CHLCV | 1005 | 1005 | 1005 | |||||||
| B | Chlamydia muridarum | 83560 | CHLMU | 916 | 919 | 919 | 919 | 916 | 916 | 916 | |||
| B | Chlamydia pneumoniae | 83558 | CHLPN | 1052 | 1052 | 1052 | 1052 | 1052 | 1052 | 1052 | 1052 | ||
| B | Chlorobium tepidum | 1097 | CHLTE | 2244 | 2248 | 2248 | 2250 | ||||||
| B | Chlamydia trachomatis | 813 | CHLTR | 894 | 894 | 894 | 895 | 895 | 895 | 895 | 895 | 895 | |
| B | Chromobacterium violaceum | 536 | CHRVO | 4400 | 4400 | ||||||||
| B | Clostridium acetobutylicum | 1488 | CLOAB | 3836 | 3848 | 3848 | 3847 | 3847 | |||||
| B | Clostridium perfringens | 1502 | CLOPE | 2722 | 2722 | 2722 | 2722 | 2721 | |||||
| B | Clostridium tetani | 1513 | CLOTE | 2412 | 2414 | 2414 | |||||||
| B | Colwellia psychrerythraea (strain 34H / ATCC BAA-681) | 167879 | COLP3 | 4871 | |||||||||
| B | Corynebacterium diphtheriae | 1717 | CORDI | 2264 | 2258 | ||||||||
| B | Corynebacterium efficiens | 152794 | COREF | 2943 | 2947 | 2945 | |||||||
| B | Corynebacterium glutamicum | 1718 | CORGL | 3092 | 3092 | 3093 | 3093 | ||||||
| B | Corynebacterium jeikeium (strain K411) | 306537 | CORJK | 2064 | |||||||||
| B | Coxiella burnetii | 777 | COXBU | 2021 | 2021 | 2026 | |||||||
| B | Cryptococcus neoformans (Filobasidiella neoformans) | 5207 | CRYNE | 6441 | |||||||||
| B | Dechloromonas aromatica (strain RCB) | 159087 | DECAR | 4155 | |||||||||
| B | Dehalococcoides ethenogenes (strain 195) | 243164 | DEHE1 | 1502 | |||||||||
| B | Dehalococcoides sp. (strain CBDB1) | 255470 | DEHSC | 1454 | |||||||||
| B | Deinococcus radiodurans | 1299 | DEIRA | 3084 | 3083 | 3083 | 3084 | 3084 | 3084 | 3084 | |||
| B | Desulfotalea psychrophila | 84980 | DESPS | 3233 | |||||||||
| B | Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) |
882 | DESVH | 3507 | 3517 | ||||||||
| B | Escherichia coli, and Escherichia coli O157:H7 | 83334 | ECO57 | 5114 | 5139 | 5140 | 5276 | 5262 | |||||
| B | Escherichia coli O6 | 217992 | ECOL6 | 5334 | 5336 | 5334 | |||||||
| B | Escherichia coli | 562 | ECOLI | 4289 | 4289 | 4301 | 4301 | 4330 | 4347 | 4347 | 4416 | 4327 | |
| B | Ehrlichia canis (strain Jake) | 269484 | EHRCJ | 921 | |||||||||
| B | Ehrlichia ruminantium (strain Gardel) | 302409 | EHRRG | 949 | |||||||||
| B | Ehrlichia ruminantium (strain Welgevonden) | 254945 | EHRRW | 886 | |||||||||
| B | Enterococcus faecalis (Streptococcus faecalis) | 1351 | ENTFA | 3242 | 3242 | 3240 | |||||||
| B | Erwinia carotovora subsp. atroseptica SCRI1043 | 218491 | ERWCT | 4449 | 4422 | ||||||||
| B | Francisella tularensis subsp. tularensis | 119856 | FRATT | 1530 | |||||||||
| B | Fusobacterium nucleatum (subsp. nucleatum) | 76856 | FUSNN | 2050 | 2050 | 2049 | 2046 | ||||||
| B | Geobacillus kaustophilus | 1462 | GEOKA | 3516 | |||||||||
| B | Geobacter sulfurreducens | 35554 | GEOSL | 3406 | 3412 | ||||||||
| B | Gloeobacter violaceus | 33072 | GLOVI | 4410 | 4406 | ||||||||
| B | Gluconobacter oxydans (Gluconobacter suboxydans) | 442 | GLUOX | 2627 | |||||||||
| B | Haemophilus ducreyi | 730 | HAEDU | 1694 | 1694 | ||||||||
| B | Haemophilus influenzae (strain 86-028NP) | 281310 | HAEI8 | 1791 | |||||||||
| B | Haemophilus | 727 | HAEIN | 1709 | 1709 | 1712 | 1707 | 1710 | 1711 | 1711 | 1711 | 1710 | |
| B | Helicobacter hepaticus | 32025 | HELHP | 1872 | 1872 | ||||||||
| B | Helicobacter pylori J99 | 85963 | HELPJ | 1488 | 1486 | 1486 | 1488 | 1488 | 1488 | 1488 | |||
| B | Helicobacter pylori | 210 | HELPY | 1565 | 1565 | 1554 | 1548 | 1548 | 1555 | 1555 | 1555 | 1553 | |
| B | Idiomarina loihiensis | 135577 | IDILO | 2608 | |||||||||
| B | Lactobacillus acidophilus | 1579 | LACAC | 1858 | |||||||||
| B | Lactobacillus johnsonii | 33959 | LACJO | 1712 | 1809 | ||||||||
| B | Lactococcus lactis (subsp. lactis) | 1360 | LACLA | 2222 | 2224 | 2224 | 2224 | 2224 | 2224 | 2225 | |||
| B | Lactobacillus plantarum | 1590 | LACPL | 3001 | 3001 | 3001 | |||||||
| B | Legionella pneumophila (strain Paris) | 297246 | LEGPA | 3010 | |||||||||
| B | Legionella pneumophila subsp. pneumophila (strain Philadelphia 1) | 272624 | LEGPH | 2929 | |||||||||
| B | Legionella pneumophila (strain Lens) | 297245 | LEGPL | 2863 | |||||||||
| B | Leifsonia xyli subsp. xyli str. CTCB07 | 281090 | LEIXX | 2003 | 2001 | ||||||||
| B | Leptospira interrogans (serogroup Icterohaemorrhagiae / serovar OS Copenhageni) |
44275 | LEPIC | 3649 | 3654 | ||||||||
| B | Leptospira interrogans | 173 | LEPIN | 4692 | 4692 | 4690 | |||||||
| B | Listeria innocua | 1642 | LISIN | 3016 | 3017 | 3016 | 3017 | 3017 | |||||
| B | Listeria monocytogenes (serotype 4b / strain F2365) | 265669 | LISMF | 2814 | 2818 | ||||||||
| B | Listeria monocytogenes | 1639 | LISMO | 2843 | 2845 | 2844 | 2844 | 2844 | |||||
| B | Mannheimia succiniciproducens (strain MBEL55E) | 221988 | MANSM | 2368 | |||||||||
| B | Mesoplasma florum (Acholeplasma florum) | 2151 | MESFL | 683 | |||||||||
| B | Methylococcus capsulatus | 414 | METCA | 2925 | |||||||||
| B | Mycobacterium bovis | 1765 | MYCBO | 3910 | |||||||||
| B | Mycoplasma gallisepticum | 2096 | MYCGA | 727 | 727 | ||||||||
| B | Mycoplasma genitalium | 2097 | MYCGE | 480 | 480 | 483 | 485 | 485 | 486 | 486 | 486 | 486 | |
| B | Mycoplasma hyopneumoniae (strain 232) | 295358 | MYCH2 | 691 | |||||||||
| B | Mycoplasma hyopneumoniae (strain 7448) | 262722 | MYCH7 | 661 | |||||||||
| B | Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) | 262719 | MYCHJ | 662 | |||||||||
| B | Mycobacterium leprae | 1769 | MYCLE | 1555 | 1590 | 1592 | 1592 | 1593 | 1601 | 1602 | |||
| B | Mycoplasma mobile | 2118 | MYCMO | 626 | 628 | ||||||||
| B | Mycoplasma mycoides (subsp. mycoides SC) | 44101 | MYCMS | 977 | 978 | ||||||||
| B | Mycobacterium paratuberculosis | 1770 | MYCPA | 4315 | 4316 | ||||||||
| B | Mycoplasma penetrans | 28227 | MYCPE | 677 | 677 | 687 | 687 | 687 | 687 | 1026 | 1029 | 1028 | |
| B | Mycoplasma pneumoniae | 2104 | MYCPN | 677 | 677 | 687 | 687 | 687 | 687 | 687 | 687 | 687 | |
| B | Mycoplasma pulmonis | 2107 | MYCPU | 772 | 772 | 778 | 772 | 778 | 772 | ||||
| B | Mycoplasma synoviae (strain 53) | 262723 | MYCS5 | 670 | |||||||||
| B | Mycobacterium tuberculosis | 1773 | MYCTU | 3918 | 3918 | 3874 | 3847 | 3854 | 3877 | 3877 | 3949 | 3935 | |
| B | Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) | 348780 | NATPD | 2784 | |||||||||
| B | Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) | 242231 | NEIG1 | 1963 | |||||||||
| B | Neisseria meningitidis (serogroup A) | 65699 | NEIMA | 2039 | 2006 | 2006 | 2039 | 2039 | 2041 | 2007 | |||
| B | Neisseria meningitidis (serogroup B) | 491 | NEIMB | 1967 | 1964 | 1965 | 1966 | 1966 | 1966 | 2000 | |||
| B | Nitrosomonas europaea | 915 | NITEU | 2375 | 2374 | 2374 | |||||||
| B | Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) | 323261 | NITOC | 2952 | |||||||||
| B | Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) | 323098 | NITWN | 2980 | |||||||||
| B | Nocardia farcinica | 37329 | NOCFA | 5933 | |||||||||
| B | Oceanobacillus iheyensis | 182710 | OCEIH | 3493 | 3493 | 3490 | |||||||
| B | Onion yellows phytoplasma | 100379 | ONYPE | 725 | 725 | ||||||||
| B | Parachlamydia sp. (strain UWE25) (subsp. Acanthamoeba sp.) |
264201 | PARUW | 2024 | 2023 | ||||||||
| B | Pasteurella multocida | 747 | PASMU | 2010 | 2014 | 2014 | 2015 | 2015 | 2015 | 2015 | |||
| B | Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) | 338963 | PELCD | 3107 | |||||||||
| B | Pelagibacter ubique | 335992 | PELUB | 1354 | |||||||||
| B | Photorhabdus luminescens (subsp. laumondii) | 141679 | PHOLL | 4557 | 4556 | ||||||||
| B | Photobacterium profundum (Photobacterium sp. (strain SS9)) |
74109 | PHOPR | 5324 | 5326 | ||||||||
| B | Porphyromonas gingivalis (Bacteroides gingivalis) | 837 | PORGI | 1864 | 1862 | ||||||||
| B | Propionibacterium acnes | 1747 | PROAC | 2292 | 2294 | ||||||||
| B | Prochlorococcus marinus | 1219 | PROMA | 1881 | 1881 | ||||||||
| B | Prochlorococcus marinus (strain MIT 9313) | 74547 | PROMM | 2257 | 2256 | ||||||||
| B | Prochlorococcus marinus subsp. pastoris (strain CCMP 1378 / MED4) |
59919 | PROMP | 1707 | 1707 | ||||||||
| B | Prochlorococcus marinus (strain NATL2A) | 59920 | PROMT | 1879 | |||||||||
| B | Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) | 264730 | PSE14 | 5041 | |||||||||
| B | Pseudomonas aeruginosa | 287 | PSEAE | 5556 | 5553 | 5554 | 5555 | 5556 | 5556 | 5554 | |||
| B | Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) | 220664 | PSEF5 | 6136 | |||||||||
| B | Pseudoalteromonas haloplanktis (strain TAC 125) | 326442 | PSEHT | 3484 | |||||||||
| B | Pseudomonas putida (strain KT2440) | 160488 | PSEPK | 5314 | 5314 | 5313 | |||||||
| B | Pseudomonas syringae (pv. tomato) | 323 | PSESM | 5278 | 5420 | 5418 | |||||||
| B | Pseudomonas syringae pv. syringae (strain B728a) | 205918 | PSEU2 | 5071 | |||||||||
| B | Psychrobacter arcticum | 334543 | PSYAR | 2099 | |||||||||
| B | Ralstonia eutropha (strain JMP134) (Alcaligenes eutrophus) | 264198 | RALEJ | 6433 | |||||||||
| B | Ralstonia solanacearum | 305 | RALSO | 5020 | 5020 | 5020 | 5012 | ||||||
| B | Rhizobium loti (Mesorhizobium loti) | 381 | RHILO | 7255 | 7259 | 7259 | 7259 | 7260 | 7255 | ||||
| B | Rhizobium meliloti (Sinorhizobium meliloti) | 382 | RHIME | 6132 | 6149 | 6149 | 6149 | 6132 | |||||
| B | Rhodopirellula baltica | 117 | RHOBA | 7271 | 7271 | ||||||||
| B | Rhodopseudomonas palustris | 1076 | RHOPA | 4798 | 4805 | ||||||||
| B | Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM | 272943 | RHOS4 | 3855 | |||||||||
| B | Rickettsia conorii, and Rickettsia rickettsii | 781, 783 | RICCN | 1374 | 1374 | 1374 | 1374 | 1372 | |||||
| B | Rickettsia felis (Rickettsia azadi) | 42862 | RICFE | 1429 | |||||||||
| B | Rickettsia prowazekii | 782 | RICPR | 834 | 835 | 834 | 834 | 834 | 834 | 834 | 834 | ||
| B | Rickettsia typhi | 785 | RICTY | 837 | |||||||||
| B | Salmonella choleraesuis | 591 | SALCH | 4606 | |||||||||
| B | Salmonella paratyphi-a | 54388 | SALPA | 4080 | |||||||||
| B | Salmonella typhi | 601 | SALTI | 4683 | 4705 | 4708 | 4716 | 4703 | |||||
| B | Salmonella typhimurium | 602 | SALTY | 4429 | 4532 | 4533 | 4513 | 4524 | |||||
| B | Shewanella oneidensis | 70863 | SHEON | 4584 | 4584 | 4583 | |||||||
| B | Shigella boydii Sb227 | 300268 | SHIB0 | 3934 | |||||||||
| B | Shigella dysenteriae Sd197 | 300267 | SHIDY | 3889 | |||||||||
| B | Shigella flexneri | 623 | SHIFL | 4259 | 4115 | 4095 | |||||||
| B | Shigella sonnei (strain Ss046) | 300269 | SHISS | 4052 | |||||||||
| B | Silicibacter pomeroyi | 89184 | SILPO | 4241 | |||||||||
| B | Staphylococcus aureus (strain COL) | 93062 | STAAC | 2674 | |||||||||
| B | Staphylococcus aureus (strain Mu50 / ATCC 700699), and Staphylococcus aureus (strain N315), and Staphylococcus aureus (strain MW2) | 158878, 158879, 196620 | STAAM | 2724 | 2727 | 2727 | 2710 | 2711 | |||||
| B | Staphylococcus aureus (strain N315) | 158879 | STAAN | 2589 | 2592 | 2593 | 2575 | 2576 | |||||
| B | Staphylococcus aureus subsp. aureus MRSA252 | 282458 | STAAR | 2634 | 2630 | ||||||||
| B | Staphylococcus aureus subsp. aureus MSSA476 | 282459 | STAAS | 2597 | 2596 | ||||||||
| B | Staphylococcus aureus (strain MW2) | 196620 | STAAW | 2659 | 2659 | 2654 | 2656 | ||||||
| B | Staphylococcus epidermidis | 1282 | STAEP | 2467 | 2467 | ||||||||
| B | Staphylococcus epidermidis (strain ATCC 35984 / RP62A) | 176279 | STAEQ | 2492 | |||||||||
| B | Staphylococcus epidermidis (strain ATCC 12228) | 176280 | STAES | 2463 | |||||||||
| B | Staphylococcus haemolyticus (strain JCSC1435) | 279808 | STAHJ | 2625 | |||||||||
| B | Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305) | 342451 | STAS1 | 2404 | |||||||||
| B | Streptococcus agalactiae serotype Ia | 355315 | STRA1 | 1983 | |||||||||
| B | Streptococcus agalactiae (serotypes III and V) | 216495, 216466 | STRA3 | 1999 | 1999 | 1999 | |||||||
| B | Streptococcus agalactiae (serotype V) | 216466 | STRA5 | 2106 | 2106 | 2105 | |||||||
| B | Streptomyces avermitilis | 33903 | STRAW | 7659 | 7662 | 7661 | |||||||
| B | Streptococcus coelicolor | 1902 | STRCO | 7798 | 8038 | 8039 | 8006 | ||||||
| B | Streptococcus mutans | 1309 | STRMU | 1953 | 1953 | 1951 | |||||||
| B | Streptococcus pyogenes serotype M1 | 301447 | STRP1 | 1691 | |||||||||
| B | Streptococcus pyogenes (serotype M3) | 301448,198466 | STRP3 | 1830 | 1831 | 1759 | 1759 | ||||||
| B | Streptococcus pyogenes (serotype M6) | 301450 | STRP6 | 1879 | |||||||||
| B | Streptococcus pyogenes (serotype M18) | 301451,186103 | STRP8 | 1837 | 1837 | 1838 | 1837 | ||||||
| B | Streptococcus pyogenes (serotype M28) | 319700 | STRPM | 1884 | |||||||||
| B | Streptococcus pneumoniae | 1313 | STRPN | 2077 | 2079 | 2079 | 2079 | 2078 | |||||
| B | Streptococcus pyogenes | 1314 | STRPY | 1688 | 1688 | 1690 | 1690 | 1690 | |||||
| B | Streptococcus pneumoniae (strain ATCC BAA-255 / R6) | 171101 | STRR6 | 2038 | 2038 | 2030 | |||||||
| B | Streptococcus thermophilus (strain CNRZ 1066) | 299768 | STRT1 | 1590 | |||||||||
| B | Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) | 264199 | STRT2 | 1578 | |||||||||
| B | Symbiobacterium thermophilum | 2734 | SYMTH | 3315 | |||||||||
| B | Synechococcus elongatus (Thermosynechococcus elongatus) | 32046 | SYNEL | 2452 | 2452 | 2451 | |||||||
| B | Synechococcus sp. (strain PCC 6301) (Anacystis nidulans) | 269084 | SYNP6 | 2525 | |||||||||
| B | Synechococcus sp. (strain WH8102) | 84588 | SYNPX | 2512 | 2512 | ||||||||
| B | Synechocystis sp. (strain PCC 6803) | 1148 | SYNY3 | 3166 | 3143 | 3138 | 3140 | 3140 | 3140 | 3505 | 3507 | ||
| B | Thermobifida fusca (strain YX) | 269800 | THEFY | 3107 | |||||||||
| B | Thermotoga maritima | 2336 | THEMA | 1847 | 1852 | 1852 | 1852 | 1852 | 1852 | 1852 | |||
| B | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) |
262724 | THET2 | 2201 | 2200 | ||||||||
| B | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | 300852 | THET8 | 2227 | |||||||||
| B | Thermoanaerobacter tengcongensis | 119072 | THETN | 2547 | 2547 | 2547 | 2545 | ||||||
| B | Thiobacillus denitrificans (strain ATCC 25259) | 292415 | THIDA | 2826 | |||||||||
| B | Treponema denticola | 158 | TREDE | 2746 | 2753 | ||||||||
| B | Treponema pallidum | 160 | TREPA | 1031 | 1031 | 1030 | 1029 | 1029 | 1029 | 1029 | 1028 | 1028 | |
| B | Tropheryma whipplei (strain TW08/27) (Whipple's bacillus) | 218496 | TROW8 | 781 | 781 | 781 | |||||||
| B | Tropheryma whipplei (strain Twist) (Whipple's bacillus), and Tropheryma whipplei (Whipple's bacillus) (Tropheryma whippelii) | 203267, 2039 | TROWT | 805 | 805 | 805 | |||||||
| B | Ureaplasma parvum | 134821 | UREPA | 611 | 603 | 603 | 611 | 611 | 611 | 611 | |||
| B | Vibrio cholerae | 666 | VIBCH | 3784 | 3784 | 3784 | 3785 | 3785 | 3785 | 3784 | |||
| B | Vibrio fischeri (strain ATCC 700601 / ES114) | 312309 | VIBF1 | 3789 | |||||||||
| B | Vibrio parahaemolyticus | 670 | VIBPA | 4821 | 4821 | 4821 | |||||||
| B | Vibrio vulnificus | 672 | VIBVU | 4483 | 4481 | 4472 | |||||||
| B | Vibrio vulnificus (strain YJ016) | 196600 | VIBVY | 4990 | 4990 | ||||||||
| B | Wigglesworthia glossinidia brevipalpis | 36870 | WIGBR | 611 | 612 | 612 | |||||||
| B | Wolbachia pipientis wMel | 66077 | WOLPM | 1158 | 1159 | ||||||||
| B | Wolinella succinogenes | 844 | WOLSU | 2028 | 2027 | ||||||||
| B | Wolbachia sp. subsp. Brugia malayi (strain TRS) | 292805 | WOLTR | 804 | |||||||||
| B | Xanthomonas axonopodis (pv. citri) | 92829 | XANAC | 4358 | 4358 | 4358 | 4354 | ||||||
| B | Xanthomonas campestris pv. campestris (strain 8004) | 314565 | XANC8 | 4238 | |||||||||
| B | Xanthomonas campestris (pv. campestris) | 340 | XANCP | 4129 | 4129 | 4129 | 4127 | ||||||
| B | Xanthomonas oryzae pv. oryzae | 64187 | XANOR | 4477 | |||||||||
| B | Xylella fastidiosa | 2371 | XYLFA | 2774 | 2772 | 2773 | 2775 | 2775 | 2777 | 2772 | |||
| B | Xylella fastidiosa (strain Temecula1 / ATCC 700964) | 183190 | XYLFT | 2007 | 2007 | 2007 | |||||||
| B | Yersinia pestis | 632 | YERPE | 3853 | 3898 | 3899 | 3899 | 3864 | |||||
| B | Yersinia pseudotuberculosis | 633 | YERPS | 4014 | |||||||||
| B | Zymomonas mobilis | 542 | ZYMMO | 2039 | |||||||||
| E | Arabidopsis thaliana | 3702 | ARATH | 28624 | 25306 | 25301 | 26019 | 26271 | 26148 | 32717 | |||
| E | Ashbya gossypii (Yeast) (Eremothecium gossypii). | 33169 | ASHGO | 4713 | 4715 | ||||||||
| E | Caenorhabditis elegans | 6239 | CAEEL | 16332 | 19810 | 17964 | 19804 | 20389 | 22769 | 21789 | 22269 | ||
| E | Candida glabrata (Yeast) (Torulopsis glabrata). | 5478 | CANGA | 5161 | |||||||||
| E | Cryptococcus neoformans | 5207 | CRYNE | 6441 | |||||||||
| E | Debaryomyces hansenii (Yeast) (Torulaspora hansenii). | 4959 | DEBHA | 6180 | |||||||||
| E | Drosophila melanogaster | 7227 | DROME | 16387 | 13600 | 13704 | 16693 | 16011 | 20042 | 16121 | |||
| E | Encephalitozoon cuniculi | 6035 | ENCCU | 1908 | |||||||||
| E | Gibberella zeae (Fusarium graminearum) | 5518 | GIBZE | 11638 | |||||||||
| E | Guillardia theta | 55529 | GUITH | 451 | |||||||||
| E | Homo sapiens | 9606 | HUMAN | 29028 | 29435 | 33243 | 31666 | ||||||
| E | Kluyveromyces lactis (Yeast) | 28985 | KLULA | 5217 | |||||||||
| E | Mus musculus (Mouse) | 10090 | MOUSE | 16214 | 21310 | 28879 | 29150 | 27796 | |||||
| E | Plasmodium falciparum (isolate 3D7) | 36329 | PLAF7 | 5250 | 5232 | ||||||||
| E | Plasmodium yoelii yoelii | 73239 | PLAYO | 5826 | |||||||||
| E | Schizosaccharomyces pombe | 4896 | SCHPO | 5024 | 5040 | 4929 | 4891 | ||||||
| E | Yarrowia lipolytica (Candida lipolytica) | 4952 | YARLI | 6012 | |||||||||
| E | Saccharomyces cerevisiae | 4932 | YEAST | 6594 | 6081 | 6127 | 6219 | 6219 | 6224 | 6503 | |||
Distribution of the number of domains per sequence
NOTE - The sequences with more than 50 domains are not shown.
Distribution of the radius of gyration
NOTES -
- The families with radius of gyration higher than 200 PAM are not shown
- Only families with at least 2 sequences are used here
distribution of the diameter
NOTES -
- The families with diameter higher than 500 PAM are not shown
- Only families with at least 2 sequences are used here