fetchProDom

http://prodom.prabi.fr/prodom/current/wsdl/fetchProDom.wsdl

fetchProDom is set of four different webservices that interrogates the ProDom database .

• fetchdom: Enter one or several (separated by spaces) ProDom AC (eg PD000039) and it returns the family(ies) description in prodom format.

• fetchdom_fasta: same as above with the results given in fasta format.

• fetchdom_align: from one ProDom AC gives two output: one is the alignment of the proteins of the ProDom family and the other is the consensus sequence. This particular webservice is made to work with blastProDom

• fetchdom_keyword: Enter one or several keyword(s)(separated by a blank space) and a “boolean”: and/or and it returns the ProDom familiy(ies) which have the keyword(s) in the description field in prodom format and a file with only their AC.

• fetchProt: Enter one Protein AC (UniProtKB) and it returns the domain composition of this protein.

Please see ProDom help page and data file format help page if needed.

We have a perl script available here to run this webservice from your computer. Please install SOAP Lite before .

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