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Use of ProDom WWW Server by other WWW services
The official URL of the ProDom Home Page is
 
http://prodom.prabi.fr/prodom.html
 
Help on available Web Services can be found there :
 
http://prodom.prabi.fr/prodom/current/html/webservices.html
 

Queries by domain with domain accession number
 
ProDom entry, AC=PD001000
http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=PD001000
 
graphical output of all proteins having domain PD001000
http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBLI&query=PD001000
Logical connectors allowed = AND, OR
 

Query by Keyword
 
list of ProDom domain(s) containing the string "P450" in "commentary" line
http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=KW&query=P450
Logical connectors allowed = AND, OR
 

Interpro, PROSITE, Pfam-A, PDB queries
 
list of ProDom domain(s) linked to another database with function or comment Kringle
http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBDR&query=kringle
 
list of ProDom domain(s) linked to the Interpro entry IPR000001
http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBDR&query=IPR000001
 
list of ProDom domain(s) containing PROSITE pattern PS00010
http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBDR&query=PS00010
 
list of ProDom domain(s) containing PROSITE pattern described in documentation PDOC00010
http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBDR&query=PDOC00010
 
list of ProDom domain(s) linked to PDB entry 2HHE
http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBDR&query=2HHE
 
list of ProDom domain(s) linked to Pfam-A entry PF00072
http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBDR&query=PF00072
  Logical connectors allowed = AND, OR, enabling to search through several databases simultaneously.
 
 

Queries by sequence (name or accession number)
 
domain structure of protein FIXJ_RHIME
http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=SPTR&query=FIXJ_RHIME
 
domain structure of protein whose UniProtKB ACcession number is P13648
http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=SPTR&query=P13648
 
domain structure of all the proteins belonging to the organism "DROME"
http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=SPTR&query=DROME
 
all proteins having a domain in common with protein FIXJ_RHIME
http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?sptr_ac2=FIXJ_RHIME

all proteins having a domain in common with protein whose UniProtKB ACcession number is P13648 http://prodom.prabi.fr/prodom/cgi-bin/ReqProdomII.pl?acc_seq2=P13648

  Logical connectors allowed = OR
 
 

Queries in ProDom-CG
 
  The requests are the same, except you have to specify CG=1
ProDom-CG entry, AC=CG001000
http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=CG001000&CG=1
 
 

Logical Connectors
 
  Where specified upwards, it is possible to use logical connectors.
graphical output of all proteins having domain PD000039 AND PD000329 http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBLI&query=PD000039+PD000329&bool_operator=AND
 
graphical output of all proteins having domain PD000039 OR PD000329 http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBLI&query=PD000039+PD000329&bool_operator=OR
 

Accessing older releases
 
  To access the previous release, just replace the word current by previous in the upwards URL
To access the release 200y.r, just replace the word current by 200y.r in the upwards URL
Please note we do not keep the old releases online, thus it is much better using the current or previous URL, which are always available.
graphical output of all proteins having domain PD000039 in the previous release: http://prodom.prabi.fr/prodom/previous/cgi-bin/request.pl?question=DBLI&query=PD000039
 
graphical output of all proteins having domain PD000039 OR PD000329 http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBLI&query=PD000039+PD000329&bool_operator=OR
 
 
 

© The ProDom database is copyrighted by INRA and CNRS
© UniProtKB copyright (c) 2002-2009 UniProt Consortium
ProDom - Server maintained by Lauranne Duquenne , on behalf of the ProDom team
Graphics design Sandrine Dalmar
Last updated on November 6th, 2008.