Advanced Protein Domain Analysis
Training Workshop

Programme

Sunday, May 18^th 2008
Hôtel Mercure Lyon-Charpennes

15:00-15:30        Welcome - Registration

15:30-16:00        Daniel KAHN (Lyon)         
                           Protein domain analysis: an introduction

16:05-16:50        Marco PAGNI (Lausanne)
                           Profile-HMM methods for protein domain prediction (under the hood)

17:00-17:45        Oliver REDFERN (London)
                           The evolution of domain families from structural and functional perspective

17:55-18:40        Erich BORNBERG-BAUER (Münster)
                           Analysis and reconstruction of the modular evolution of proteins

19:00                  Get-together

Monday, May 19^th 2008
Lyon University

9:00-9:15            Daniel KAHN (Lyon)
                           The EMBRACE European network

9:15-9:45            Aurélie LAUGRAUD (Lyon)
                           Web services and workflows for bioinformatics: an introduction

9:45-10:30          Aurélie LAUGRAUD, Lauranne DUQUENNE and Daniel KAHN (Lyon)
                           ProDom practical

10:30-10:45        Coffee break

10:45-12:00        Teresa MIYAR (Hinxton), Aurélie LAUGRAUD, Lauranne DUQUENNE
                            and Daniel KAHN (Lyon)
                           InterPro and ProDom practical

12:00-14:00        Lunch

14:00-16:00        Steve PETTIFER, David THORNE and Phil McDERMOTT (Manchester)
                           Utopia practical

16:00-16:15        Coffee break

16:15-16:45        Anne-Sophie SERTIER (Lyon)
                           Impact of domain rearrangements on protein innovation

16:50-17:20        Diana EKMAN (Stockholm)
                           Domain architecture evolution

17:25-17:40        Marco MASSEROLI (Milano)
                           GFINDer: Genome Function INtegrated Discoverer

17:45-18:00        Vincent BLOCH (Clermont-Ferrand)
                           InterProScan gridification

18:05-18:20        Ekaterina SHELEST (Jena)
                           Multidomain structure and prediction of fuction of fungal polyketide synthases

20:00                  Workshop dinner

Tuesday, May 20^th 2008
Lyon University

8:30-10:15          Marco PAGNI (Lausanne)
                           MyHits-HitKeeper practical

10:15-10:30        Coffee break

10:30-12:00        Anne-Sophie SERTIER, Aurélie LAUGRAUD, Lauranne DUQUENNE
                           and Daniel KAHN (Lyon)
                           Practical on protein family evolution

12:00-14:00        Lunch

14:00- 15:00       Round table on the evolution of protein families and workshop conclusion